PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 485345
Common NameARALYDRAFT_485345
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 287aa    MW: 31378 Da    PI: 10.3118
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
485345genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.3e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G+g W+tI +        k R+  ++k++w++
           485345  5 KQKWTPEEETALKAGVLKHGTGKWRTILSDPEyssilKSRSNVDLKDKWRN 55
                     79***********************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.116161IPR017930Myb domain
SuperFamilySSF466891.2E-15259IPR009057Homeodomain-like
SMARTSM007177.2E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-14556IPR009057Homeodomain-like
PfamPF002499.1E-9555IPR001005SANT/Myb domain
CDDcd116605.51E-18656No hitNo description
SuperFamilySSF467852.07E-12117198IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.3E-15117182IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.5E-8117185IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150418.85119187IPR005818Linker histone H1/H5, domain H15
PfamPF005382.7E-5121180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGAPKQKWTP EEETALKAGV LKHGTGKWRT ILSDPEYSSI LKSRSNVDLK DKWRNISVTA  60
LWGSRKKAKL ALKRTPSSGS RQDDNATAIT IVSLANGDGG GQQIYAPSPP AGSCEPPRPS  120
TSVDKIILEA ITNLKRPFGP DGKSILMYIE ENFKMQPDMK RLVTSRLKYL TNVGTLVKKK  180
HKYRISPNYM AEGARQRSPQ LLLEGNKENT PKPKENGVKN LMIMGMTEKE AAAAAARAVA  240
EAECAISEAE EAARDADEAE AKAEAAHIFA KAAMKSLKYR MHSQTR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0588870.0AY058887.1 Arabidopsis thaliana AT3g49850/T16K5_200 mRNA, complete cds.
GenBankAY0650690.0AY065069.1 Arabidopsis thaliana AT3g49850/T16K5_200 mRNA, complete cds.
GenBankAY0790430.0AY079043.1 Arabidopsis thaliana AT3g49850/T16K5_200 mRNA, complete cds.
GenBankAY5195420.0AY519542.1 Arabidopsis thaliana MYB transcription factor (At3g49850) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876001.10.0hypothetical protein ARALYDRAFT_485345
SwissprotQ9M2X31e-168TRB3_ARATH; Telomere repeat-binding factor 3
TrEMBLD7LSZ20.0D7LSZ2_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.5__1337__AT3G49850.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38092759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.11e-158telomere repeat binding factor 3